If you have an unsupported PC, where no BIOS update exists to support CA 2023 certs, and your OEM has not submitted a signed KEK file to MS, then there isn't much you can do from Windows.
Your BIOS might be updated through manual methods of applying a KEK cert file (sometimes) or by deleting all certs and replacing them.
For unsupported PC's, uncheck "Update boot manager" and leave everything untouched. NTLite is simply pre-defining a set of reg keys that affect the Secure Boot update task in Windows. The task is smart and won't do anything that will harm your PC.
But if you have a mix of unsupported PC's, and they're not all the same model, it's better to figure out the Secure Boot issues locally. NTLite wants to be helpful, but running the Secure Boot task this way will trigger some expected TPM-WMI errors. Those can be safely ignored, but some users will spend too much time trying to guess if they're critical messages or not.
At this point in time (June 2026), most supported PC's should have the CA 2023 certs installed in place. The only pending action is revoking PCA 2011, for which MS has not announced when they will force it. Some of these settings are moot, unless you've been blocking Monthly Updates for the past half-year.